PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6BS_993CBD840.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bZIP
Protein Properties Length: 78aa    MW: 9209.47 Da    PI: 10.9499
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6BS_993CBD840.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1491.3e-15263162
                           XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                 bZIP_1  1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62
                           +ke kr +r+ +NR++A+  R+RKka++  Le kvk Le++N++L ++ ++l++e + l++ 
  Traes_6BS_993CBD840.1  2 DKEHKRLKRLLRNRVSAQQARERKKAYLGDLEVKVKDLEKKNSELEERHSTLQNENQMLRQI 63
                           6899*****************************************************99886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.2E-14266IPR004827Basic-leucine zipper domain
PfamPF001702.0E-14364IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.036467IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.8E-17666No hitNo description
SuperFamilySSF579592.0E-14664No hitNo description
CDDcd147044.10E-12758No hitNo description
PROSITE patternPS000360924IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
ADKEHKRLKR LLRNRVSAQQ ARERKKAYLG DLEVKVKDLE KKNSELEERH STLQNENQML  60
RQILKNTTVS RRGPSEGQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2oqq_A9e-152766342Transcription factor HY5
2oqq_B9e-152766342Transcription factor HY5
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3655261e-128AK365526.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2034M24.
GenBankAK3758151e-128AK375815.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3106C21.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571497.13e-49PREDICTED: transcription factor HY5-like
SwissprotQ9SM502e-34HY5_SOLLC; Transcription factor HY5
TrEMBLI1HYI44e-49I1HYI4_BRADI; Uncharacterized protein
STRINGBRADI3G07540.11e-48(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140838111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11260.16e-35bZIP family protein